Bacterial Genomics :

• Transcriptional regulators
• Extragenic non-coding regions in bacterial genomes
• Detection of transcriptional regulator binding-sites in extragenic regions of bacterial genomes
• REP (Repetitive Extragenic Palindromic) sequences
• Mobile elements in genomes
• Genomic plasticity

Transmembrane proteins :

• Database of human transmembrane proteins

Bioinformatics:

• Sequence analysis algorithms
• Databases
• Transcriptional networks
• Definition of XML standars for networks representation

Immune system and pathogens:

• Bacterial DNA recognition by human immune system
• Molecular mimicry between human proteins and proteins from pathogens